Explanation of output

Explanation of output

The following image shows the directory structure of the output directories after running the example data.

Remember that the example workflow defined two datasets - one with three subsets, and one with a single subset.

Hence the output directories contain

• the original fasta and subset directories (red)
• annotation files that are built for each dataset (green)
• subset specific alignment and tree files (orange)
• subset specific annotation files (yellow)
• subset specific ancestor files (blue)

Output directory structure of example data